| mod ID | m6A_site_173223 | mod Site | chr12:4273811-4273812:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGACCAGTTTTAAGGGGAGGACCGGTGCGAGTGAGGCAGCC |
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| Motif Score | 3.62240476190476 | |||||||||||||||
| RNA Structure Motif |
........((......))............. |
MFE | -1.80 | |||||||||||||
| Support Dataset Num | 13 | Support sub-Dataset Num | 47 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739534, GSM2739535, GSM2991403, GSM1272360, GSM1272368, GSM1339395, GSM1339401, GSM1339407, GSM1723349, GSM1723351, GSM1908208, GSM1908212, GSM2283210, GSM2283211, GSM2283214, GSM2283215, GSM2324292, GSM2332975, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2417477, GSM2417478, GSM2417479, GSM2460352, GSM2460354, GSM2460358, GSM2460360, GSM2460362, GSM2754224, GSM2754226, GSM2754248, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2483505 |
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| Cell/Tissue List |
HeLa, H1B, hESCs, HEK293T, fibroblasts, LCLs, MT4, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, MSC, TIME, TREX, endometrial, GSCs |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000648100.1,ENST00000261254.8 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_523080;panTro5:m6A_site_14654;rheMac8:m6A_site_9924 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1