| mod ID | m6A_site_173258 | mod Site | chr12:4300484-4300485:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGAATTGAAATAAGGAGGGACATGATGGGGAAGGAGTACA |
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| Motif Score | 3.64304761904762 | |||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | |||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 25 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2991403, GSM3396437, GSM3396438, GSE125240, GSE129842, GSM928399, GSM928401, GSM1166140, GSM1166142, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339407, GSM1723347, GSM1723349, GSM1723351, GSM1828594, GSM2417477, GSM2417478, GSM2417479, GSM2460354, GSM2460360, GSM2460362, GSM2754226 |
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| Cell/Tissue List |
HeLa, HEK293T, brain, hESC-HEK293T, U2OS, hNPCs, hESCs, fibroblasts, LCLs, CD8T, HEK293A-TOA, MSC, TREX |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-REF-seq,MAZTER-seq,m6A-CLIP/IP | |||||||||||||||
| Transcript ID List | ENST00000261254.8,ENST00000648100.1 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_523043 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1