| mod ID | m6A_site_173853 | mod Site | chr12:6329806-6329807:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCCCCTTCAGAAGTGGGAGGACAGCGCCCACAAGCCACAGA |
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| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.......(((((.(.....).)))))..... |
MFE | -9.00 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 13 | Support sub-Dataset Num | 42 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739523, GSM2884197, GSM2987447, GSM908331, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1982257, GSM2010456, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2324298, GSM2332990, GSM2460345, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754222, GSM2754224, GSM2754235, GSM2754237, GSM2754240, GSM2754244, GSM2754246, GSM2464911, GSM2464917, GSM2464919, GSM2464921, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, A549, MM6, Huh7, peripheral-blood, HEK293T, iSLK, MSC, TIME, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000543359.5,ENST00000534885.5,ENST00000536717.5,ENST00000540022.5,ENST00000543995.5,ENST00000162749.6 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1