RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_173863

mod Site

chr12:6333473-6333474:-

mod Type

m6A

Sequence

TTCTTGCACAGTGGACCGGGACACCGTGTGTGGCTGCAGGA

Motif Score

3.64304761904762

RNA Structure Motif

...((((.((((((....))).)).).))))

MFE

-9.70

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE125240, GSE129842, GSE37002, GSE83438, GSE93911

Support sub-Dataset List

GSE125240, GSE129842, GSM908331, GSM2203051, GSM2464919

Cell/Tissue List

kidney, hESC-HEK293T, HepG2, Huh7, endometrial

Seq Type List

m6A-REF-seq,MAZTER-seq,m6A-seq,MeRIP-seq

Transcript ID List

ENST00000543048.5,ENST00000534885.5,ENST00000540022.5,ENST00000366159.8,ENST00000437813.7,ENST00000536194.1,ENST00000543995.5,ENST00000162749.6,ENST00000539372.5,ENST00000440083.6

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000543048.5	ENSG00000067182.7	TNFRSF1A	nonsense_mediated_decay	intron-3
ENST00000534885.5	ENSG00000067182.7	TNFRSF1A	nonsense_mediated_decay	cds-3
ENST00000540022.5	ENSG00000067182.7	TNFRSF1A	protein_coding	cds-3
ENST00000366159.8	ENSG00000067182.7	TNFRSF1A	protein_coding	cds-4
ENST00000437813.7	ENSG00000067182.7	TNFRSF1A	processed_transcript	exon-3
ENST00000536194.1	ENSG00000067182.7	TNFRSF1A	protein_coding	cds-4
ENST00000543995.5	ENSG00000067182.7	TNFRSF1A	nonsense_mediated_decay	intron-2
ENST00000162749.6	ENSG00000067182.7	TNFRSF1A	protein_coding	cds-4
ENST00000539372.5	ENSG00000067182.7	TNFRSF1A	protein_coding	cds-4
ENST00000440083.6	ENSG00000067182.7	TNFRSF1A	protein_coding	cds-4

Conserved Sites

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

31281898, 31257032, 22575960, 27773535, 30154548

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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