| mod ID | m6A_site_188973 | mod Site | chr12:52070273-52070274:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GTGGCGGCGGGGGATACGGGACCCGGGCGGGAATTCCTTCC |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
(.(.(((.........))).).)........ |
MFE | -8.10 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 7 | Support sub-Dataset Num | 21 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2987447, GSM2987448, GSM2987449, GSM3083805, GSM3083806, GSM3083809, GSM3083810, GSM3582046, GSM3582052, GSM3582053, GSM3582054, GSM2332975, GSM2332985, GSM2332986, GSM2332988, GSM2332989, GSM2332990, GSM2464921, GSM2464923, GSM2464931, GSM2564019 |
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| Cell/Tissue List |
HepG2, HeLa, A549, GSC-11, HEK293T, endometrial, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000336854.8,ENST00000552544.5,ENST00000547409.1,ENST00000553049.5,ENST00000550604.1,ENST00000548915.1,ENST00000552947.1 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1