| mod ID | m6A_site_189095 | mod Site | chr12:52238760-52238761:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATGAGATCAACTTCCTCAGGACCCTCAATGAGACGGTGAGG |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.........((((..........)))).... |
MFE | -2.80 | ||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 7 | ||||||||||||||||||||||||||||
| Support Dataset List | GSE37002, GSE76367, GSE93911 | ||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM908331, GSM1982257, GSM2464905, GSM2464907, GSM2464913, GSM2464919, GSM2464931 |
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| Cell/Tissue List | HepG2, A549, endometrial, HEC-1-A | ||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000548088.1,ENST00000638501.1,ENST00000331817.6,ENST00000546856.5,ENST00000547613.1 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_225534 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID | 22575960, 27117702, 30154548 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1