Details of RNA Modification Site of hg38
mod ID m6A_site_189118 mod Site chr12:52247239-52247240:-
mod Type m6A Sequence TCTGGTACGATGCCTAAGGAACTCAGACGGAAGAGGCCTGA
Motif Score 3.37338095238095
RNA Structure Motif ................(((........))).
MFE -2.10
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE74016GSE93911
Support sub-Dataset List GSM1908208, GSM2464931
Cell/Tissue List MT4, HEC-1-A
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000546686.1,rmsk_3791116
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000546686.1ENSG00000257671.1KRT7-ASantisenseexon-1
rmsk_3791116rmsk_3791116Arthur1ChAT-Tip100exon
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 2757244230154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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