Details of RNA Modification Site of hg38
mod ID m6A_site_189469 mod Site chr12:53039027-53039028:+
mod Type m6A Sequence ATGGCATATCCCTACATGGAACTTTTTAGTGGATTTTGTTT
Motif Score 3.37338095238095
RNA Structure Motif ..(((((((.(........).))).))))..
 MFE -3.50
Support Dataset Num 3 Support sub-Dataset Num 15
Support Dataset List GSE125803, GSE83438, GSE93676
Support sub-Dataset List

GSM3582046, GSM3582047, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203060, GSM2203063, GSM2203064, GSM2460348, GSM2460350, GSM2460352, GSM2460356, GSM2754213, GSM2754214
Cell/Tissue List HeLa, Huh7, iSLK, MSC, TIME
Seq Type List MeRIP-seq
Transcript ID List ENST00000420463.7,ENST00000416762.7,ENST00000262056.13,ENST00000549592.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000420463.7ENSG00000063046.17EIF4Bprotein_codingintron-12
ENST00000416762.7ENSG00000063046.17EIF4Bprotein_codingintron-11
ENST00000262056.13ENSG00000063046.17EIF4Bprotein_codingintron-12
ENST00000549592.1ENSG00000063046.17EIF4Bretained_intronexon-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31597913, 27773535, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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