RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_190322

mod Site

chr12:53464760-53464761:+

mod Type

m6A

Sequence

ATCCTCTATTTATCCACAGGACAGGTACAGCACAGGCAGCG

Motif Score

3.64304761904762

RNA Structure Motif

.(((((.(((...))).))))).........

MFE

-2.40

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE102493, GSE110320, GSE83438

Support sub-Dataset List

GSM2991400, GSM2987447, GSM2203051

Cell/Tissue List

HeLa, HepG2, Huh7

Seq Type List

m6A-seq,MeRIP-seq

Transcript ID List

ENST00000359282.9,ENST00000634357.1,ENST00000547859.2,ENST00000549863.5,ENST00000549272.1,ENST00000439930.7,ENST00000546652.6,ENST00000612963.1,ENST00000548933.5,ENST00000553064.6,ENST00000552296.6,ENST00000359462.9,ENST00000550585.5,ENST00000437231.5,ENST00000552819.5,ENST00000546463.5,ENST00000562264.5,ENST00000447282.5,ENST00000547987.2,ENST00000455667.7,ENST00000547717.1

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000359282.9	ENSG00000197111.15	PCBP2	protein_coding	intron-8
ENST00000634357.1	ENSG00000282977.1	PCBP2-OT1	non_coding	exon-1
ENST00000547859.2	ENSG00000197111.15	PCBP2	protein_coding	cds-3
ENST00000549863.5	ENSG00000197111.15	PCBP2	protein_coding	intron-8
ENST00000549272.1	ENSG00000197111.15	PCBP2	retained_intron	intron-1
ENST00000439930.7	ENSG00000197111.15	PCBP2	protein_coding	cds-8
ENST00000546652.6	ENSG00000197111.15	PCBP2	nonsense_mediated_decay	utr3-9
ENST00000612963.1	ENSG00000273658.1	RF02271	misc_RNA	exon-1
ENST00000548933.5	ENSG00000197111.15	PCBP2	protein_coding	intron-7
ENST00000553064.6	ENSG00000197111.15	PCBP2	protein_coding	intron-2
ENST00000552296.6	ENSG00000197111.15	PCBP2	protein_coding	cds-9
ENST00000359462.9	ENSG00000197111.15	PCBP2	protein_coding	cds-9
ENST00000550585.5	ENSG00000197111.15	PCBP2	nonsense_mediated_decay	utr3-5
ENST00000437231.5	ENSG00000197111.15	PCBP2	protein_coding	intron-8
ENST00000552819.5	ENSG00000197111.15	PCBP2	protein_coding	intron-7
ENST00000546463.5	ENSG00000197111.15	PCBP2	protein_coding	cds-9
ENST00000562264.5	ENSG00000197111.15	PCBP2	protein_coding	intron-7
ENST00000447282.5	ENSG00000197111.15	PCBP2	protein_coding	intron-8
ENST00000547987.2	ENSG00000197111.15	PCBP2	retained_intron	intron-3
ENST00000455667.7	ENSG00000197111.15	PCBP2	protein_coding	intron-7
ENST00000547717.1	ENSG00000257379.1	AC023509.1	processed_transcript	exon-11

Conserved Sites

mm10:m6A_site_226306

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

29507755, 3086759, 27773535

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.