RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_190869

mod Site

chr12:54002549-54002550:+

mod Type

m6A

Sequence

CAATATGTATTTAACCAGGGACCGTCGGTATGAGGTGGCCC

Motif Score

3.62240476190476

RNA Structure Motif

........(((....(((...)))....)))

MFE

-3.20

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE102493, GSE120229, GSE125803, GSE29714, GSE37003, GSE46705, GSE55572, GSE83438, GSE87516, GSE90914, GSE93676

Support sub-Dataset List

GSM2739507, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582054, GSM928399, GSM928401, GSM908337, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1339429, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203055, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2332990, GSM2417477, GSM2417478, GSM2417479, GSM2460352, GSM2460354, GSM2754220, GSM2754244

Cell/Tissue List

HeLa, HEK293T, A549, HepG2, Huh7, HEK293A-TOA, MSC

Seq Type List

m6A-seq,MeRIP-seq

Transcript ID List

ENST00000504315.1,ENST00000513209.1,ENST00000509328.1,ENST00000504557.1,ENST00000508190.1,ENST00000303450.5

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000504315.1	ENSG00000197757.8	HOXC6	protein_coding	intron-1
ENST00000513209.1	ENSG00000273049.1	AC012531.3	protein_coding	intron-1
ENST00000509328.1	ENSG00000197757.8	HOXC6	protein_coding	intron-1
ENST00000504557.1	ENSG00000180806.5	HOXC9	processed_transcript	exon-2
ENST00000508190.1	ENSG00000180806.5	HOXC9	protein_coding	cds-3
ENST00000303450.5	ENSG00000180806.5	HOXC9	protein_coding	cds-2

Conserved Sites

mm10:m6A_site_226569;rn6:m6A_site_95064

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

RBM15B

Writer Catalysis Detail

Writer Name	Writer ID	Writer Binding Site	Source
RBM15B	RBM15B:CH46143	chr12:54002536-54002576	SBDH685-46143

PubMed ID

29507755, 31597913, 22608085, 22575960, 24284625, 24981863, 27773535, 27773536, 28525753, 29109479

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.