Details of RNA Modification Site of hg38
mod ID m6A_site_192301 mod Site chr12:55967160-55967161:+
mod Type m6A Sequence CCCGGGACTCCTAACTGGGGACCTCCTTGATTGTCCCCCCC
Motif Score 3.62240476190476
RNA Structure Motif ..((((.....))))................
 MFE -4.40
Support Dataset Num 2 Support sub-Dataset Num 4
Support Dataset List GSE110320, GSE87190
Support sub-Dataset List

GSM2987449, GSM2324298, GSM2324308, GSM2324310
Cell/Tissue List HepG2, peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000556464.5,ENST00000555408.5,ENST00000555357.1,ENST00000440311.6,ENST00000354056.4,ENST00000553376.5,ENST00000266970.9,ENST00000554619.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000556464.5ENSG00000123374.11CDK2processed_transcriptintron-2
ENST00000555408.5ENSG00000123374.11CDK2nonsense_mediated_decayutr3-1
ENST00000555357.1ENSG00000123374.11CDK2nonsense_mediated_decayutr3-1
ENST00000440311.6ENSG00000123374.11CDK2protein_codingintron-1
ENST00000354056.4ENSG00000123374.11CDK2protein_codingintron-1
ENST00000553376.5ENSG00000123374.11CDK2protein_codingintron-1
ENST00000266970.9ENSG00000123374.11CDK2protein_codingintron-1
ENST00000554619.5ENSG00000123374.11CDK2retained_intronexon-1
Conserved Sites mm10:m6A_site_75428
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List RBM15
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
RBM15RBM15:CH18196chr12:55967122-55967208SBDH828-4783
PubMed ID 3086759, 29249359

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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