| mod ID | m6A_site_195196 | mod Site | chr12:57520506-57520507:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGCGCTCCCGAGGTCAGAGACTTAAGTCTAAGGCACTGAG |
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| Motif Score | 3.31938095238095 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
........(((..((((....))))..))). |
MFE | -6.50 | ||||||||||||||||||||||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 28 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739534, GSM2739535, GSM2991403, GSM2884195, GSM2987449, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM928399, GSM1339405, GSM2010456, GSM2203052, GSM2203060, GSM2332975, GSM2417477, GSM2417478, GSM2417479, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754213, GSM2754224, GSM2754248, GSM2464911, GSM2464931 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, A549, HEK293T, fibroblasts, MM6, Huh7, GSC-11, HEK293A-TOA, MSC, TIME, TREX, iSLK, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000551116.5,ENST00000623876.2,ENST00000547526.1,ENST00000552740.5,ENST00000346473.7 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1