Details of RNA Modification Site of hg38
mod ID m6A_site_199380 mod Site chr12:72255648-72255649:-
mod Type m6A Sequence ACATCTCAAGTTAAAGAGGAACTGCCCGGAACAGCCCGGGG
Motif Score 3.37338095238095
RNA Structure Motif ....(((...(.((.....)))..)))....
 MFE -1.30
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE120229, GSE55572
Support sub-Dataset List GSM3396438, GSM1339393
Cell/Tissue List HEK293T, hNPCs
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List rmsk_3828081,ENST00000435350.1,ENST00000549957.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
rmsk_3828081rmsk_3828081MER70BERVLexon
ENST00000435350.1ENSG00000236333.3TRHDE-AS1antisenseexon-2
ENST00000549957.1ENSG00000236333.3TRHDE-AS1retained_intronexon-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24981863

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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