Details of RNA Modification Site of hg38
mod ID m6A_site_200185 mod Site chr12:77030022-77030023:-
mod Type m6A Sequence TATGGAAGTCTGCAGGAGGGACCAGCGTCAGGGTCAGGGTC
Motif Score 3.62240476190476
RNA Structure Motif ..............((((........)))).
 MFE -5.20
Support Dataset Num 7 Support sub-Dataset Num 11
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2991403, GSM2987447, GSM3083810, GSM3396437, GSM2332975, GSM2332978, GSM2754244, GSM2464909, GSM2464911
Cell/Tissue List

HeLa, HepG2, HEK293T, GSC-11, MSC, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000416496.6,ENST00000550669.5,ENST00000322886.12
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000416496.6ENSG00000165891.16E2F7protein_codingcds-10
ENST00000550669.5ENSG00000165891.16E2F7protein_codingcds-10
ENST00000322886.12ENSG00000165891.16E2F7protein_codingcds-10
Conserved Sites mm10:m6A_site_69809
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1