RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_201380

mod Site

chr12:89349272-89349273:-

mod Type

m6A

Sequence

CCAGAATGTATACCAGGTGGACTCTCTGCAATCTACGTGAA

Motif Score

4.06504166666667

RNA Structure Motif

...........(((((...))))).......

MFE

-2.20

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE120229, GSE125803, GSE37003, GSE52600, GSE55572, GSE76367, GSE83438, GSE90914, GSE93676, GSE93911, GSE98623

Support sub-Dataset List

GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSM908337, GSM1272360, GSM1272368, GSM1339393, GSM1339395, GSM1339405, GSM1339407, GSM1339429, GSM1339439, GSM1982263, GSM2203043, GSM2203047, GSM2203051, GSM2203052, GSM2203056, GSM2203060, GSM2203063, GSM2203064, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754213, GSM2754214, GSM2754220, GSM2754222, GSM2754224, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464931, GSM2602070

Cell/Tissue List

HEK293T, HeLa, A549, HepG2, H1B, hNPCs, hESCs, fibroblasts, H1299, Huh7, HEK293A-TOA, iSLK, MSC, TIME, HEC-1-A, AML

Seq Type List

MeRIP-seq,m6A-seq,miCLIP

Transcript ID List

ENST00000547291.1,ENST00000279488.8,ENST00000308385.6

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000547291.1	ENSG00000139318.8	DUSP6	protein_coding	cds-2
ENST00000279488.8	ENSG00000139318.8	DUSP6	protein_coding	cds-3
ENST00000308385.6	ENSG00000139318.8	DUSP6	protein_coding	cds-2

Conserved Sites

mm10:m6A_site_68535;rn6:m6A_site_90464;susScr11:m6A_site_101977

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

RBM15

Writer Catalysis Detail

Writer Name	Writer ID	Writer Binding Site	Source
RBM15	RBM15:CH18891	chr12:89349137-89349307	SBDH828-4974

PubMed ID

31597913, 22575960, 25456834, 24981863, 27117702, 27773535, 28525753, 29109479, 30154548, 28920958

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.