| mod ID | m6A_site_204606 | mod Site | chr12:102196284-102196285:+ | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AAGTTAACTCAGTTTTTTAGACTATAAATTTGTGTCTTATA |
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| Motif Score | 3.31938095238095 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.....(((((...)))))............. |
MFE | -0.60 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 14 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739507, GSM2991416, GSM3396437, GSM3396438, GSM4024128, GSM928399, GSM928401, GSM1339393, GSM1339395, GSM1339427, GSM2203056, GSM2203060, GSM2203063, GSM2203064 |
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| Cell/Tissue List |
HeLa, HEK293T, hNPCs, hESCs, A549, Huh7 |
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| Seq Type List | m6A-seq,MeRIP-seq,DART-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000541394.5,ENST00000327680.6,ENST00000392911.6,ENST00000417507.6,ENST00000543784.5,ENST00000457614.6,ENST00000412715.3,ENST00000535811.1 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1