| mod ID | m6A_site_204910 | mod Site | chr12:103776625-103776626:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AAGATGGGAAAGGGCGAAGGACATTGAAGCTAAGGAATAGA |
|||||||||||||
| Motif Score | 3.64304761904762 | |||||||||||||||
| RNA Structure Motif |
.......(((.............)))..... |
MFE | -1.60 | |||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 4 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSE129842, GSM1828596, GSM2203063, GSM2602070 |
|||||||||||||||
| Cell/Tissue List | hESC-HEK293T, A549, Huh7, AML | |||||||||||||||
| Seq Type List | MAZTER-seq,m6A-CLIP/IP,MeRIP-seq,miCLIP | |||||||||||||||
| Transcript ID List | ENST00000392876.8,ENST00000447799.5 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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