| mod ID | m6A_site_21389 | mod Site | chr1:35184548-35184549:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGTGCGGGGCCTGTGGGTGGACAGGGTCCTAGAGGAATGGG |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||
| RNA Structure Motif |
(((.(((((......))))).)))....... |
MFE | -13.20 | ||||||||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 20 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739506, GSM2991403, GSM2884199, GSM3396438, GSE125240, GSE129842, GSM908331, GSM1166139, GSM1723347, GSM1908206, GSM1908212, GSM2203047, GSM2203051, GSM2203052, GSM2203056, GSM2203060, GSM2203064, GSM2602070 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, brain, kidney, hESC-HEK293T, HepG2, U2OS, LCLs, MT4, Huh7, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-REF-seq,MAZTER-seq,miCLIP | ||||||||||||||||||||
| Transcript ID List | ENST00000460428.5,ENST00000357214.6,ENST00000470472.5 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_432899;rn6:m6A_site_80447;susScr11:m6A_site_115240 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1