Details of RNA Modification Site of hg38
mod ID m6A_site_217851 mod Site chr12:130164245-130164246:+
mod Type m6A Sequence GACGGGCGGCGAGAACACGGACAAGCTGGAGAAGCTCATGG
Motif Score 3.64304761904762
RNA Structure Motif .((((..............))))........
 MFE -3.70
Support Dataset Num 6 Support sub-Dataset Num 17
Support Dataset List
Support sub-Dataset List

GSM3396437, GSM3396438, GSM928399, GSM928401, GSM908331, GSM908333, GSM908335, GSM908337, GSM2332985, GSM2332986, GSM2332990, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915
Cell/Tissue List HEK293T, HepG2, endometrial
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000539839.1,ENST00000229030.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000539839.1ENSG00000111432.4FZD10protein_codingcds-1
ENST00000229030.4ENSG00000111432.4FZD10protein_codingcds-1
Conserved Sites mm10:m6A_site_483320;susScr11:m6A_site_39120
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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