Details of RNA Modification Site of hg38
mod ID m6A_site_22062 mod Site chr1:35883432-35883433:+
mod Type m6A Sequence GTATATGGGATGGAAGCGGGACCCTCGGGAGCAGGTAAGGG
Motif Score 3.62240476190476
RNA Structure Motif .(((.((....))...)))............
 MFE -2.80
Support Dataset Num 3 Support sub-Dataset Num 6
Support Dataset List GSE102493, GSE87516, GSE93676
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2332986, GSM2332990, GSM2754216, GSM2754238
Cell/Tissue List HeLa, HEK293T, iSLK
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000373204.6,ENST00000373206.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000373204.6ENSG00000092847.12AGO1protein_codingcds-1
ENST00000373206.5ENSG00000092847.12AGO1protein_codingintron-1
Conserved Sites mm10:m6A_site_432424;susScr11:m6A_site_115327
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 27773536, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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