| mod ID | m6A_site_225840 | mod Site | chr13:40665967-40665968:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTTGCTGGAGGAGAGCGAGGACTTCCCGCAGGCGCCCGGCT |
||||||||
| Motif Score | 4.06504166666667 | ||||||||||
| RNA Structure Motif |
.((.(....(((.((....)))))...).)) |
MFE | -6.20 | ||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 7 | ||||||||
| Support Dataset List | GSE87516, GSE90914, GSE93676 | ||||||||||
| Support sub-Dataset List |
GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2417478, GSM2754224 |
||||||||||
| Cell/Tissue List | HEK293T, HEK293A-TOA, TIME | ||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||
| Transcript ID List | ENST00000379561.6 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | mm10:m6A_site_381468;susScr11:m6A_site_16639 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID | 27773536, 28525753, 29109479 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1