| mod ID | m6A_site_227459 | mod Site | chr13:45967518-45967519:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AAACAAATAAATCCGAGAGAACTGAGAGTCTGGAAGGTGAG |
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| Motif Score | 3.37338095238095 | |||||||||||||||
| RNA Structure Motif |
......(((.(((..........)))))).. |
MFE | -3.40 | |||||||||||||
| Support Dataset Num | 13 | Support sub-Dataset Num | 36 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2991403, GSM2884195, GSM2987449, GSM3396437, GSM3396438, GSM3582054, GSM1166140, GSM1339393, GSM1339401, GSM1339403, GSM2010454, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2283213, GSM2324298, GSM2324308, GSM2324310, GSM2460347, GSM2754211, GSM2754220, GSM2754222, GSM2754226, GSM2754235, GSM2754244, GSM2564019 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, A549, U2OS, hNPCs, fibroblasts, MM6, Huh7, Jurkat, peripheral-blood, iSLK, MSC, TIME, TREX, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000282007.7,ENST00000242848.8 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_195073;rheMac8:m6A_site_26718;rn6:m6A_site_37662;susScr11:m6A_site_17117 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1