Details of RNA Modification Site of hg38
mod ID m6A_site_230897 mod Site chr13:73059577-73059578:+
mod Type m6A Sequence CCCGCGGCTGCCTCCAGAGGACCTGGTCCAGGTAGGAAGAG
Motif Score 3.62240476190476
RNA Structure Motif ..((((((((((.....))))...)))))).
 MFE -12.00
Support Dataset Num 3 Support sub-Dataset Num 7
Support Dataset List GSE102493, GSE120229, GSE87516
Support sub-Dataset List

GSM2739502, GSM3396437, GSM2332985, GSM2332986, GSM2332988, GSM2332989, GSM2332990
Cell/Tissue List HeLa, HEK293T
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000477333.5,ENST00000539231.5,ENST00000377687.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000477333.5ENSG00000102554.14KLF5processed_transcriptintron-1
ENST00000539231.5ENSG00000102554.14KLF5protein_codingintron-1
ENST00000377687.6ENSG00000102554.14KLF5protein_codingcds-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 27773536

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1