Details of RNA Modification Site of hg38
mod ID m6A_site_235060 mod Site chr13:102839609-102839610:+
mod Type m6A Sequence TGCATCATAGCATTCCAGAGACTTAACTGGCAAAGATTTGG
Motif Score 3.31938095238095
RNA Structure Motif .........((((........))))......
 MFE -3.60
Support Dataset Num 13 Support sub-Dataset Num 47
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739535, GSM2991403, GSM2991416, GSM2884195, GSM2987449, GSM3396437, GSM3396438, GSM3582049, GSM928399, GSM928401, GSM928403, GSM1135020, GSM1135032, GSM1135033, GSM1339393, GSM1339401, GSM1339403, GSM1339405, GSM1339425, GSM1339427, GSM1339439, GSM1594131, GSM1723347, GSM2203060, GSM2203064, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754211, GSM2754213, GSM2754214, GSM2754237, GSM2754238, GSM2754240
Cell/Tissue List

HeLa, CD34, HepG2, HEK293T, hNPCs, fibroblasts, A549, GM12878, LCLs, Huh7, HEK293A-TOA, iSLK, MSC, TIME, TREX
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000652006.1,ENST00000639132.1,ENST00000651228.1,ENST00000651048.1,ENST00000602836.2,ENST00000651855.1,ENST00000652084.1,ENST00000639118.1,ENST00000448849.3,ENST00000490317.1,ENST00000257336.6,ENST00000639435.1,ENST00000652766.1,ENST00000638434.1,ENST00000651808.1,ENST00000651949.1,ENST00000651008.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000652006.1ENSG00000134897.14BIVMnonsense_mediated_decayutr3-9
ENST00000639132.1ENSG00000270181.3BIVM-ERCC5protein_codingcds-10
ENST00000651228.1ENSG00000134897.14BIVMprotein_codingcds-12
ENST00000651048.1ENSG00000134897.14BIVMnonsense_mediated_decayutr3-9
ENST00000602836.2ENSG00000134899.20ERCC5protein_codingcds-9
ENST00000651855.1ENSG00000134897.14BIVMnonsense_mediated_decayutr3-11
ENST00000652084.1ENSG00000134897.14BIVMprotein_codingcds-12
ENST00000639118.1ENSG00000270181.3BIVM-ERCC5nonsense_mediated_decayintron-4
ENST00000448849.3ENSG00000134897.14BIVMprotein_codingcds-9
ENST00000490317.1ENSG00000134897.14BIVMretained_intronexon-7
ENST00000257336.6ENSG00000134897.14BIVMprotein_codingcds-11
ENST00000639435.1ENSG00000270181.3BIVM-ERCC5protein_codingcds-11
ENST00000652766.1ENSG00000134897.14BIVMnonsense_mediated_decayutr3-12
ENST00000638434.1ENSG00000270181.3BIVM-ERCC5nonsense_mediated_decayintron-4
ENST00000651808.1ENSG00000134897.14BIVMnonsense_mediated_decayutr3-10
ENST00000651949.1ENSG00000134897.14BIVMprotein_codingcds-11
ENST00000651008.1ENSG00000134897.14BIVMprotein_codingcds-12
Conserved Sites mm10:m6A_site_7347;rheMac8:m6A_site_27128;rn6:m6A_site_104057;susScr11:m6A_site_17908
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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