Details of RNA Modification Site of hg38
mod ID m6A_site_239470 mod Site chr14:21503347-21503348:-
mod Type m6A Sequence GAAGCGGCGTGCAGAACAGGACTCGACTACAGTAGCTGCCT
Motif Score 4.06504166666667
RNA Structure Motif .(.((.(......).)).)............
 MFE -1.30
Support Dataset Num 21 Support sub-Dataset Num 73
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2987447, GSM2987449, GSM3396437, GSM3396438, GSM3582048, GSM3582049, GSM3582052, GSM3582054, GSM928399, GSM928401, GSM928403, GSM908337, GSM1135020, GSM1135021, GSM1135033, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM1723349, GSM1723351, GSM1982257, GSM2010454, GSM2010456, GSM2283210, GSM2283211, GSM2283212, GSM2283214, GSM2283215, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2332990, GSM2417477, GSM2417478, GSM2417479, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2464921, GSM2464923, GSM2564019, GSM2564022
Cell/Tissue List

HeLa, HepG2, HEK293T, A549, H1A, H1B, hNPCs, hESCs, fibroblasts, GM12878, LCLs, MM6, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, MSC, TIME, TREX, endometrial, NB4
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000298717.9,ENST00000538267.5,ENST00000537163.5,ENST00000542054.5,ENST00000539760.5,ENST00000536201.5,ENST00000544248.1,ENST00000543235.5,ENST00000544500.5,ENST00000396522.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000298717.9ENSG00000165819.12METTL3protein_codingcds-3
ENST00000538267.5ENSG00000165819.12METTL3retained_intronexon-3
ENST00000537163.5ENSG00000165819.12METTL3nonsense_mediated_decayintron-3
ENST00000542054.5ENSG00000165819.12METTL3retained_intronexon-3
ENST00000539760.5ENSG00000165819.12METTL3nonsense_mediated_decaycds-2
ENST00000536201.5ENSG00000165819.12METTL3retained_intronexon-3
ENST00000544248.1ENSG00000165819.12METTL3nonsense_mediated_decaycds-3
ENST00000543235.5ENSG00000165819.12METTL3nonsense_mediated_decaycds-3
ENST00000544500.5ENSG00000165819.12METTL3retained_intronexon-1
ENST00000396522.6ENSG00000165819.12METTL3retained_intronexon-2
Conserved Sites panTro5:m6A_site_19485;rheMac8:m6A_site_52134;rn6:m6A_site_36309
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 2 Writer Name List METTL14,METTL3
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
METTL14METTL14:CH2605chr14:21503339-21503364SBDH141-1946
METTL3METTL3:CH3600chr14:21503330-21503479SBDH144-599
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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