Details of RNA Modification Site of hg38
mod ID m6A_site_246261 mod Site chr14:50664930-50664931:-
mod Type m6A Sequence TTTATCTCAAGGCTGTCTAGACTCTTAATGCTGTGACCCTT
Motif Score 3.31938095238095
RNA Structure Motif .(((.(((................))).)))
 MFE -2.80
Support Dataset Num 3 Support sub-Dataset Num 3
Support Dataset List GSE102493, GSE120229, GSE90914
Support sub-Dataset List

GSM2991403, GSM3396437, GSM2417477
Cell/Tissue List HeLa, HEK293T, HEK293A-TOA
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000555720.5,ENST00000553731.1,ENST00000602664.1,ENST00000324679.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000555720.5ENSG00000151748.14SAV1protein_codingintron-1
ENST00000553731.1ENSG00000151748.14SAV1protein_codingintron-1
ENST00000602664.1ENSG00000151748.14SAV1retained_intronexon-1
ENST00000324679.4ENSG00000151748.14SAV1protein_codingintron-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 28525753

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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