| mod ID | m6A_site_246269 | mod Site | chr14:50665571-50665572:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GTCCAACAATTCCAAGACGAACTGATATCTGTCTTCCAGAT |
||||||||
| Motif Score | 3.37338095238095 | ||||||||||
| RNA Structure Motif |
........((((((..........)))))). |
MFE | -3.10 | ||||||||
| Support Dataset Num | 9 | Support sub-Dataset Num | 22 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2991403, GSM3396437, GSM3396438, GSM928399, GSM928401, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1339395, GSM1339401, GSM1339407, GSM1339427, GSM1339439, GSM2203047, GSM2464909, GSM2464911, GSM2464919, GSM2464923, GSM2564019 |
||||||||||
| Cell/Tissue List |
HeLa, HEK293T, U2OS, hESCs, fibroblasts, A549, Huh7, endometrial, NB4 |
||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||
| Transcript ID List | ENST00000324679.4 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | panTro5:m6A_site_20044 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1