Details of RNA Modification Site of hg38
mod ID m6A_site_248653 mod Site chr14:56118595-56118596:+
mod Type m6A Sequence GGATTGTAGCGGCGGCGCGGACTCGGCGGGGATCGCGGCGG
Motif Score 4.06504166666667
RNA Structure Motif ...((....))((((.(((....))).))))
 MFE -7.70
Support Dataset Num 2 Support sub-Dataset Num 6
Support Dataset List GSE107954, GSE87516
Support sub-Dataset List

GSM2884197, GSM2332985, GSM2332986, GSM2332988, GSM2332989, GSM2332990
Cell/Tissue List CD34, HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000559044.5,ENST00000267460.9,rmsk_4181780
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000559044.5ENSG00000139946.10PELI2protein_codingintron-1
ENST00000267460.9ENSG00000139946.10PELI2protein_codingutr5-1
rmsk_4181780rmsk_4181780(GCG)nSimple_repeatexon
Conserved Sites mm10:m6A_site_185689
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30065315, 27773536

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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