| mod ID | m6A_site_250315 | mod Site | chr14:61322249-61322250:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTATCTGACGGTGAGCGTGGACCAGGTGCGCGTGGGCCAGA |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.........(((((.((...)).)))))... |
MFE | -7.00 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 16 | |||||||||||||||||||||||||||||||||
| Support Dataset List | GSE85724, GSE87516, GSE93911 | |||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2464907, GSM2464909, GSM2464911, GSM2464913 |
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| Cell/Tissue List |
Jurkat, CD4T, HEK293T, endometrial |
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| Seq Type List | m6A-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000555906.5,ENST00000555542.5,ENST00000332981.10,ENST00000555185.5,ENST00000557294.5,ENST00000556778.5 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID | 27371828, 27773536, 30154548 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1