Details of RNA Modification Site of hg38
mod ID m6A_site_250486 mod Site chr14:61747956-61747957:+
mod Type m6A Sequence TATAAAGATATTTTGAGCAGACTGTAAACAAGAAAAAAAAA
Motif Score 3.31938095238095
RNA Structure Motif .....(((((.(((...)))...)))))...
 MFE -0.90
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE102493, GSE125780
Support sub-Dataset List GSM2991416, GSM4024125
Cell/Tissue List HeLa, HEK293T
Seq Type List m6A-seq,DART-seq
Transcript ID List ENST00000323441.10,ENST00000394997.5,ENST00000555937.1,ENST00000337138.9,ENST00000539097.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000323441.10ENSG00000100644.17HIF1Aprotein_codingutr3-14
ENST00000394997.5ENSG00000100644.17HIF1Aprotein_codingutr3-15
ENST00000555937.1ENSG00000258964.1AL137129.1processed_transcriptintron-1
ENST00000337138.9ENSG00000100644.17HIF1Aprotein_codingutr3-15
ENST00000539097.2ENSG00000100644.17HIF1Aprotein_codingutr3-15
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 31548708

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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