| mod ID | m6A_site_263997 | mod Site | chr14:102083138-102083139:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GTCACCAAAGAAGGCCTGGAACTTCCAGAGGATGAAGAAGA |
|||||||||||||||||||||||
| Motif Score | 3.37338095238095 | |||||||||||||||||||||||||
| RNA Structure Motif |
..........(((((...)))))........ |
MFE | -5.50 | |||||||||||||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 22 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739506, GSM2991403, GSM2991416, GSM2884195, GSM2884197, GSM2884199, GSM908335, GSM1339393, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1982263, GSM2283210, GSM2283212, GSM2283213, GSM2464905, GSM2464919, GSM2564019, GSM2564022 |
|||||||||||||||||||||||||
| Cell/Tissue List |
HeLa, CD34, HepG2, hNPCs, HEK293T, fibroblasts, H1299, Jurkat, endometrial, NB4, MM6 |
|||||||||||||||||||||||||
| Seq Type List | m6A-seq | |||||||||||||||||||||||||
| Transcript ID List | rmsk_4271218,ENST00000554401.1,ENST00000334701.11,ENST00000216281.12 | |||||||||||||||||||||||||
| Transcript Detail |
|
|||||||||||||||||||||||||
| Conserved Sites | mm10:m6A_site_149534 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | RBM15B | |||||||||||||||||||||||
| Writer Catalysis Detail |
|
|||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1