| mod ID | m6A_site_270393 | mod Site | chr15:39582229-39582230:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGCGTGTTTGACATCTTTGAACTCACCGGGGCCGCCCGCAA |
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| Motif Score | 3.37338095238095 | |||||||||||||||
| RNA Structure Motif |
((((((.....)))))).....((.....)) |
MFE | -1.20 | |||||||||||||
| Support Dataset Num | 7 | Support sub-Dataset Num | 26 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739522, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM3582052, GSM3582053, GSM2754213, GSM2754214, GSM2754216, GSM2754235, GSM2754240, GSM2754246, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2464923, GSM2464931, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, A549, iSLK, TIME, endometrial, HEC-1-A, MM6 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000260356.5,ENST00000397591.2 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_349196 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1