| mod ID | m6A_site_270867 | mod Site | chr15:40161200-40161201:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGCCTGCAGCAGGACGAGGACCTGAGCCAGGAATGCAGGA |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.((..((((.......)))).))........ |
MFE | -4.70 | ||||||||||||||||||||||||||||
| Support Dataset Num | 15 | Support sub-Dataset Num | 37 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739506, GSM2739507, GSM2739522, GSM2739534, GSM2739535, GSM2991403, GSM2987447, GSM2987449, GSM3582054, GSM908331, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1339427, GSM1908206, GSM2010454, GSM2010456, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2283213, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2460352, GSM2464911, GSM2464913, GSM2464931, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, HepG2, A549, U2OS, MT4, MM6, Huh7, Jurkat, peripheral-blood, GSC-11, MSC, endometrial, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000560120.5,ENST00000558715.5,ENST00000287598.10,ENST00000412359.7,ENST00000559414.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1