| mod ID | m6A_site_280338 | mod Site | chr15:58597561-58597562:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CGAGAGAGTTATCAAATGGGACACATGAGACGCTAACTGCA |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((..((..(((.....)))..)).))).. |
MFE | -3.00 | ||||||||||||||||||||||||||||
| Support Dataset Num | 9 | Support sub-Dataset Num | 19 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2991416, GSM2884195, GSM2884197, GSM2884199, GSM3396437, GSE129842, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1166142, GSM1166143, GSM1339395, GSM1339427, GSM1339429, GSM1339439, GSM2464931, GSM2602070, GSM2602071 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, hESC-HEK293T, U2OS, hESCs, A549, HEC-1-A, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,MAZTER-seq,miCLIP | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000482945.5,ENST00000260408.8,ENST00000402627.5,ENST00000396136.6,ENST00000561288.1 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_636352;susScr11:m6A_site_3956 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1