| mod ID | m6A_site_282367 | mod Site | chr15:63908215-63908216:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTAGGAAAACAATATAAAGGACATCCTCATCATCACGGGGT |
||||||||||||||||||
| Motif Score | 3.64304761904762 | ||||||||||||||||||||
| RNA Structure Motif |
............(((....)))......... |
MFE | -1.50 | ||||||||||||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 13 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2991403, GSM3396438, GSM3582046, GSM3582047, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSM1339425, GSM1339429, GSM1339439, GSM1594131, GSM1723349 |
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| Cell/Tissue List | HeLa, HEK293T, A549, GM12878, LCLs | ||||||||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000261891.7,ENST00000457488.5,ENST00000559007.5 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_23217;rheMac8:m6A_site_51111 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1