Details of RNA Modification Site of hg38
mod ID m6A_site_282369 mod Site chr15:63908237-63908238:-
mod Type m6A Sequence AGTCTGGGGTGGGAGTGTGGACTTAGGAAAACAATATAAAG
Motif Score 4.06504166666667
RNA Structure Motif .......((((....))))............
 MFE -2.10
Support Dataset Num 4 Support sub-Dataset Num 10
Support Dataset List
Support sub-Dataset List

GSM3396438, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM3582054, GSM1339425, GSM1339429, GSM1339439, GSM1594131
Cell/Tissue List HEK293T, HeLa, A549, GM12878
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000261891.7,ENST00000559007.5,ENST00000457488.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000261891.7ENSG00000035664.11DAPK2protein_codingutr3-11
ENST00000559007.5ENSG00000035664.11DAPK2nonsense_mediated_decayutr3-12
ENST00000457488.5ENSG00000035664.11DAPK2protein_codingutr3-12
Conserved Sites mm10:m6A_site_634755;panTro5:m6A_site_23219;rheMac8:m6A_site_51113;rn6:m6A_site_98917
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31597913, 24981863, 25611135

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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