| mod ID | m6A_site_29502 | mod Site | chr1:47432153-47432154:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCACCCCCCAGTGAATAAAGACTGAAGTTATTCATTCCAAA |
||||||||
| Motif Score | 3.31938095238095 | ||||||||||
| RNA Structure Motif |
....(((((((((.........))))))))) |
MFE | -4.40 | ||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 12 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM3582047, GSM1594131, GSM1908206, GSM2203047, GSM2203055, GSM2203059, GSM2203064, GSM2417477, GSM2460352, GSM2460356, GSM2460360, GSM2754226 |
||||||||||
| Cell/Tissue List |
HeLa, GM12878, MT4, Huh7, HEK293A-TOA, MSC, TIME, TREX |
||||||||||
| Seq Type List | MeRIP-seq,m6A-seq | ||||||||||
| Transcript ID List | ENST00000445551.1 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | na | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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