Details of RNA Modification Site of hg38
mod ID m6A_site_296666 mod Site chr15:98948680-98948681:+
mod Type m6A Sequence CATGGAGGGCGGCCTTCTGGACAAGCCAGACAACTGTCCTG
Motif Score 3.64304761904762
RNA Structure Motif (((....)))(((((.....)))))......
 MFE -7.30
Support Dataset Num 3 Support sub-Dataset Num 6
Support Dataset List GSE102493, GSE107954, GSE129842
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2991400, GSM2884195, GSM2884199, GSE129842
Cell/Tissue List HeLa, CD34, hESC-HEK293T
Seq Type List m6A-seq,MAZTER-seq
Transcript ID List ENST00000268035.10,ENST00000558762.5,ENST00000649865.1,ENST00000650285.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000268035.10ENSG00000140443.14IGF1Rprotein_codingcds-20
ENST00000558762.5ENSG00000140443.14IGF1Rprotein_codingcds-20
ENST00000649865.1ENSG00000140443.14IGF1Rprotein_codingcds-20
ENST00000650285.1ENSG00000140443.14IGF1Rprotein_codingcds-20
Conserved Sites mm10:m6A_site_552371
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 30065315, 31257032

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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