Details of RNA Modification Site of hg38
mod ID m6A_site_298884 mod Site chr16:554533-554534:+
mod Type m6A Sequence CCAGCTCTTGTGACACAGAGACTATTTTATCAATTGTCAGT
Motif Score 3.31938095238095
RNA Structure Motif ((((........))))...............
 MFE -1.20
Support Dataset Num 3 Support sub-Dataset Num 9
Support Dataset List GSE120229, GSE46705, GSE83438
Support sub-Dataset List

GSM3396437, GSM1135032, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059
Cell/Tissue List HEK293T, HeLa, Huh7
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000565010.1,ENST00000219611.7,ENST00000566977.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000565010.1ENSG00000103326.12CAPN15retained_intronexon-3
ENST00000219611.7ENSG00000103326.12CAPN15protein_codingutr3-14
ENST00000566977.1ENSG00000103326.12CAPN15protein_codingintron-2
Conserved Sites mm10:m6A_site_257442
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24284625, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1