Details of RNA Modification Site of hg38
mod ID m6A_site_302468 mod Site chr16:2207238-2207239:+
mod Type m6A Sequence CGGGGCTATCCACATCTGGGACTTGAAAACAGACCACAACG
Motif Score 4.06504166666667
RNA Structure Motif .........((((...........))))...
 MFE -2.60
Support Dataset Num 2 Support sub-Dataset Num 3
Support Dataset List GSE83438, GSE93911
Support sub-Dataset List

GSM2203051, GSM2464905, GSM2464913
Cell/Tissue List Huh7, endometrial
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000565687.5,ENST00000563067.5,ENST00000562352.5,ENST00000570224.5,ENST00000568542.5,ENST00000562479.5,ENST00000569848.1,ENST00000564088.5,ENST00000301724.14,ENST00000563107.5,ENST00000569417.6,ENST00000567623.6,ENST00000397124.5,ENST00000565250.1,ENST00000565330.5,ENST00000568194.5,ENST00000566835.5,ENST00000561651.5,ENST00000569457.5,ENST00000382450.8,ENST00000567282.5,ENST00000562844.5,ENST00000565717.5,ENST00000564319.5,ENST00000562851.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000565687.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-7
ENST00000563067.5ENSG00000167965.18MLST8retained_intronexon-5
ENST00000562352.5ENSG00000167965.18MLST8protein_codingcds-6
ENST00000570224.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-6
ENST00000568542.5ENSG00000167965.18MLST8retained_intronexon-5
ENST00000562479.5ENSG00000167965.18MLST8protein_codingcds-6
ENST00000569848.1ENSG00000167965.18MLST8retained_intronexon-3
ENST00000564088.5ENSG00000167965.18MLST8protein_codingcds-6
ENST00000301724.14ENSG00000167965.18MLST8protein_codingcds-6
ENST00000563107.5ENSG00000167965.18MLST8nonsense_mediated_decaycds-5
ENST00000569417.6ENSG00000167965.18MLST8protein_codingcds-6
ENST00000567623.6ENSG00000167965.18MLST8nonsense_mediated_decayutr3-7
ENST00000397124.5ENSG00000167965.18MLST8protein_codingcds-6
ENST00000565250.1ENSG00000167965.18MLST8protein_codingcds-6
ENST00000565330.5ENSG00000167965.18MLST8retained_intronexon-5
ENST00000568194.5ENSG00000167965.18MLST8retained_intronexon-5
ENST00000566835.5ENSG00000167965.18MLST8nonsense_mediated_decaycds-6
ENST00000561651.5ENSG00000167965.18MLST8processed_transcriptexon-6
ENST00000569457.5ENSG00000167965.18MLST8protein_codingcds-7
ENST00000382450.8ENSG00000167965.18MLST8protein_codingcds-6
ENST00000567282.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-6
ENST00000562844.5ENSG00000167965.18MLST8processed_transcriptexon-6
ENST00000565717.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-6
ENST00000564319.5ENSG00000167965.18MLST8processed_transcriptexon-4
ENST00000562851.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-6
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27773535, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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