Details of RNA Modification Site of hg38
mod ID m6A_site_302475 mod Site chr16:2208275-2208276:+
mod Type m6A Sequence TGACCCAGCTCATCCCCAAGACTAAGATCCCTGCCCACACG
Motif Score 3.31938095238095
RNA Structure Motif ...............................
 MFE 0.00
Support Dataset Num 6 Support sub-Dataset Num 11
Support Dataset List
Support sub-Dataset List

GSM1908206, GSM2203047, GSM2203051, GSM2283212, GSM2283213, GSM2324292, GSM2417478, GSM2417479, GSM2464909, GSM2464913, GSM2464927
Cell/Tissue List

MT4, Huh7, Jurkat, peripheral-blood, HEK293A-TOA, endometrial, HEC-1-A
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000567282.5,ENST00000562392.1,ENST00000570224.5,ENST00000565250.1,ENST00000561651.5,ENST00000563107.5,ENST00000569417.6,ENST00000568194.5,ENST00000566835.5,ENST00000382450.8,ENST00000301724.14,ENST00000563067.5,ENST00000564088.5,ENST00000568542.5,ENST00000397124.5,ENST00000565330.5,ENST00000562352.5,ENST00000565717.5,ENST00000562239.1,ENST00000565687.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000567282.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-7
ENST00000562392.1ENSG00000167965.18MLST8retained_intronexon-1
ENST00000570224.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-7
ENST00000565250.1ENSG00000167965.18MLST8protein_codingcds-7
ENST00000561651.5ENSG00000167965.18MLST8processed_transcriptintron-6
ENST00000563107.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-6
ENST00000569417.6ENSG00000167965.18MLST8protein_codingcds-7
ENST00000568194.5ENSG00000167965.18MLST8retained_intronexon-6
ENST00000566835.5ENSG00000167965.18MLST8nonsense_mediated_decayintron-6
ENST00000382450.8ENSG00000167965.18MLST8protein_codingcds-7
ENST00000301724.14ENSG00000167965.18MLST8protein_codingcds-7
ENST00000563067.5ENSG00000167965.18MLST8retained_intronexon-6
ENST00000564088.5ENSG00000167965.18MLST8protein_codingcds-7
ENST00000568542.5ENSG00000167965.18MLST8retained_intronexon-6
ENST00000397124.5ENSG00000167965.18MLST8protein_codingcds-7
ENST00000565330.5ENSG00000167965.18MLST8retained_intronexon-6
ENST00000562352.5ENSG00000167965.18MLST8protein_codingcds-7
ENST00000565717.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-8
ENST00000562239.1ENSG00000167965.18MLST8retained_intronexon-1
ENST00000565687.5ENSG00000167965.18MLST8nonsense_mediated_decayutr3-8
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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