| mod ID | m6A_site_308187 | mod Site | chr16:11255112-11255113:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGCGTGAAGATGGCCTCGGGACCCACGAGCATCCGCGTGCA |
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| Motif Score | 3.62240476190476 | |||||||||||||||
| RNA Structure Motif |
...((((..((((.......))))))))... |
MFE | -7.20 | |||||||||||||
| Support Dataset Num | 14 | Support sub-Dataset Num | 37 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739534, GSM2739535, GSM2987449, GSM3582052, GSM3582053, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339395, GSM1594131, GSM1723349, GSM1723351, GSM2010454, GSM2010456, GSM2283214, GSM2283215, GSM2332978, GSM2417477, GSM2417478, GSM2417479, GSM2460350, GSM2460352, GSM2754214, GSM2754216, GSM2754220, GSM2754222, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464921, GSM2464923, GSM2564022 |
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| Cell/Tissue List |
HeLa, HepG2, A549, H1A, H1B, hESCs, GM12878, LCLs, MM6, CD4T, GSC-11, HEK293A-TOA, iSLK, MSC, TIME, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000332029.2,ENST00000644787.1 | |||||||||||||||
| Transcript Detail |
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| Conserved Sites | panTro5:m6A_site_24916 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 1 | Writer Name List | RBM15 | |||||||||||||
| Writer Catalysis Detail |
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1