Details of RNA Modification Site of hg38
mod ID m6A_site_308957 mod Site chr16:12781178-12781179:-
mod Type m6A Sequence TCCACGCCATGCCAGGTAAGACTCGGGTCATCGCTTGTGAC
Motif Score 3.31938095238095
RNA Structure Motif ((.(((((.(((...)))..)).))).))..
 MFE -6.00
Support Dataset Num 5 Support sub-Dataset Num 8
Support Dataset List
Support sub-Dataset List

GSM2987447, GSM2987449, GSM2203051, GSM2203059, GSM2324292, GSM2464923, GSM2564019, GSM2564022
Cell/Tissue List

HepG2, Huh7, peripheral-blood, endometrial, NB4, MM6
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000381774.9,ENST00000433677.6,ENST00000539677.1,ENST00000261660.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000381774.9ENSG00000103381.12CPPED1protein_codingintron-2
ENST00000433677.6ENSG00000103381.12CPPED1protein_codingintron-2
ENST00000539677.1ENSG00000103381.12CPPED1retained_intronexon-2
ENST00000261660.4ENSG00000103381.12CPPED1protein_codingintron-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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