Details of RNA Modification Site of hg38
mod ID m6A_site_312879 mod Site chr16:23679366-23679367:+
mod Type m6A Sequence GTCGCTGCTGGGGAACTGGAACTGCCTGCGGGGCAGTTGGA
Motif Score 3.37338095238095
RNA Structure Motif ..((((....))))..((((((...))))))
 MFE -9.70
Support Dataset Num 3 Support sub-Dataset Num 6
Support Dataset List GSE102493, GSE110320, GSE87190
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739534, GSM2987447, GSM2987448, GSM2324298
Cell/Tissue List HeLa, HepG2, peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000570220.5,ENST00000300093.9,ENST00000562272.5,ENST00000564202.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000570220.5ENSG00000166851.15PLK1nonsense_mediated_decaycds-1
ENST00000300093.9ENSG00000166851.15PLK1protein_codingintron-1
ENST00000562272.5ENSG00000166851.15PLK1retained_intronexon-1
ENST00000564202.1ENSG00000166851.15PLK1processed_transcriptintron-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 3086759, 29249359

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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