| mod ID | m6A_site_317676 | mod Site | chr16:30774941-30774942:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ACTTCCCAGGAGGGGAAGGGACAGACCAGCCCCAGCCGCTG |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
......((((..((......))..))))... |
MFE | -11.40 | ||||||||||||||||||||||||||||
| Support Dataset Num | 19 | Support sub-Dataset Num | 49 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739503, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991400, GSM2884195, GSM2884197, GSM3396437, GSM3396438, GSE125240, GSE129842, GSM928399, GSM928401, GSM928403, GSM908337, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339395, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1723349, GSM1828596, GSM1982257, GSM2010454, GSM2203047, GSM2203051, GSM2417478, GSM2417479, GSM2460345, GSM2460348, GSM2460352, GSM2460358, GSM2460360, GSM2460362, GSM2754220, GSM2464919, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, kidney, hESC-HEK293T, HepG2, H1A, H1B, hESCs, fibroblasts, A549, LCLs, MM6, Huh7, HEK293A-TOA, iSLK, MSC, TIME, TREX, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-REF-seq,MAZTER-seq,m6A-CLIP/IP | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000357890.9,ENST00000493683.5,ENST00000324685.10,ENST00000602784.1,ENST00000563683.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_572090;panTro5:m6A_site_25769 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1