| mod ID | m6A_site_317680 | mod Site | chr16:30775103-30775104:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGAGGGTTGGAGCTGCAGGGACCCGTTTGGACCCACAGCCT |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
............(((.((.....)).))).. |
MFE | -5.70 | ||||||||||||||||||||||||||||
| Support Dataset Num | 18 | Support sub-Dataset Num | 53 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739503, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991400, GSM2884195, GSM2987447, GSM3396437, GSM3396438, GSM3582052, GSM3582053, GSM3582054, GSM928399, GSM928401, GSM928403, GSM1135020, GSM1135021, GSM1272358, GSM1272360, GSM1272362, GSM1272366, GSM1272368, GSM1339395, GSM1339425, GSM1339427, GSM1339429, GSM1982257, GSM2010454, GSM2010456, GSM2203047, GSM2283210, GSM2324298, GSM2324310, GSM2417478, GSM2417479, GSM2460345, GSM2460352, GSM2460358, GSM2460360, GSM2460362, GSM2754220, GSM2754244, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464919, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, A549, H1A, H1B, hESCs, MM6, Huh7, Jurkat, peripheral-blood, HEK293A-TOA, iSLK, MSC, TIME, TREX, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000563683.5,ENST00000602784.1,ENST00000324685.10,ENST00000357890.9,ENST00000493683.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_25770 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1