Details of RNA Modification Site of hg38
mod ID m6A_site_323810 mod Site chr16:58160847-58160848:-
mod Type m6A Sequence AGAGAGGAAGGTGCTCTCAGACTGATAGATTAGAGGAGACA
Motif Score 3.31938095238095
RNA Structure Motif ........((((..............)))).
 MFE -1.10
Support Dataset Num 3 Support sub-Dataset Num 3
Support Dataset List GSE107954, GSE125780, GSE83438
Support sub-Dataset List

GSM2884199, GSM4024128, GSM2203051
Cell/Tissue List CD34, HEK293T, Huh7
Seq Type List m6A-seq,DART-seq,MeRIP-seq
Transcript ID List ENST00000567730.6,ENST00000563307.1,ENST00000262506.8,ENST00000566813.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000567730.6ENSG00000070770.9CSNK2A2protein_codingintron-7
ENST00000563307.1ENSG00000070770.9CSNK2A2protein_codingutr3-5
ENST00000262506.8ENSG00000070770.9CSNK2A2protein_codingintron-11
ENST00000566813.5ENSG00000070770.9CSNK2A2processed_transcriptintron-10
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30065315, 31548708, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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