Details of RNA Modification Site of hg38
mod ID m6A_site_327185 mod Site chr16:68235980-68235981:-
mod Type m6A Sequence CGCGGCCGACCCCGCCGCGGACCCCTGCCCCTGGCCCGGAT
Motif Score 3.62240476190476
RNA Structure Motif ........((((.((........)).)))).
 MFE -7.30
Support Dataset Num 2 Support sub-Dataset Num 5
Support Dataset List GSE110320, GSE87516
Support sub-Dataset List

GSM2987448, GSM2332985, GSM2332986, GSM2332988, GSM2332989
Cell/Tissue List HepG2, HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000473183.6,ENST00000564382.5,ENST00000562724.1,ENST00000565858.5,ENST00000251366.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000473183.6ENSG00000103067.13ESRP2protein_codingcds-1
ENST00000564382.5ENSG00000103067.13ESRP2protein_codingintron-1
ENST00000562724.1ENSG00000103067.13ESRP2protein_codingintron-1
ENST00000565858.5ENSG00000103067.13ESRP2protein_codingcds-1
ENST00000251366.7ENSG00000103067.13ESRP2retained_intronexon-1
Conserved Sites mm10:m6A_site_604913
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 3086759, 27773536

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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