| mod ID | m6A_site_327640 | mod Site | chr16:68737341-68737342:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCG |
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| Motif Score | 3.31938095238095 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((.(((......))))))........... |
MFE | -6.20 | ||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 9 | ||||||||||||||||||||||||||||
| Support Dataset List | GSE52600, GSE55572, GSE93911 | ||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM1272358, GSM1272360, GSM1272364, GSM1272366, GSM1272368, GSM1339429, GSM2464911, GSM2464927, GSM2464931 |
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| Cell/Tissue List |
H1A, H1B, A549, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000611625.4,ENST00000612417.4,ENST00000566612.5,ENST00000261769.10,ENST00000621016.4 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_605230;susScr11:m6A_site_104326 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID | 25456834, 24981863, 30154548 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1