Details of RNA Modification Site of hg38
mod ID m6A_site_328423 mod Site chr16:69676915-69676916:+
mod Type m6A Sequence TTAGTATGTTAAAAGAAGGGACCGAGGTCAGTGTGGCTACA
Motif Score 3.62240476190476
RNA Structure Motif ..............(((....))).......
 MFE -2.50
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE102493
Support sub-Dataset List GSM2739502, GSM2739503
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000393742.7,ENST00000566899.6,ENST00000627621.3,ENST00000426654.6,ENST00000650987.1,ENST00000567239.5,ENST00000349945.6,ENST00000567990.5,ENST00000354436.6,ENST00000562429.1,ENST00000565301.2,ENST00000563474.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000393742.7ENSG00000102908.21NFAT5nonsense_mediated_decayintron-9
ENST00000566899.6ENSG00000102908.21NFAT5nonsense_mediated_decayintron-9
ENST00000627621.3ENSG00000102908.21NFAT5nonsense_mediated_decayintron-8
ENST00000426654.6ENSG00000102908.21NFAT5nonsense_mediated_decayintron-10
ENST00000650987.1ENSG00000102908.21NFAT5nonsense_mediated_decayintron-8
ENST00000567239.5ENSG00000102908.21NFAT5protein_codingintron-9
ENST00000349945.6ENSG00000102908.21NFAT5protein_codingintron-9
ENST00000567990.5ENSG00000102908.21NFAT5nonsense_mediated_decayintron-11
ENST00000354436.6ENSG00000102908.21NFAT5protein_codingintron-8
ENST00000562429.1ENSG00000102908.21NFAT5retained_intronexon-1
ENST00000565301.2ENSG00000102908.21NFAT5protein_codingintron-3
ENST00000563474.2ENSG00000102908.21NFAT5nonsense_mediated_decayintron-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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